Download & Installation

Download

  1. Download ImageJ.

  2. Download HTPheno (5.97 MB) with the example files applied in the tutorials.

  3. Download Source Code (42 KB).

Installation

  1. Install ImageJ (see also ImageJ - Installation instructions).

  2. Unpack the HTPheno.zip folder into the ImageJ plugins directory (e.g. /ImageJ/plugins).
    The unpacked folder contains the following files:
    • HTPheno_.jar:

      • ImageJ plugin for Image Analysis of High-Throughput Phenotyping

    • config_color2class_side.csv & config_color2class_top.csv:

      • side/top view object classes configuration files

    • config_regions_side.csv & config_regions_top.csv:

      • side/top view regions configuration files

    • config_class2number.csv:

      • internal mapping configuration file

    • config_number2class.csv:

      • output colour mapping configuration file

    • config_scaling_side.csv & config_scaling_top.csv:

      • side/top view scaling factor configuration files

    Note: Please look up the manual and the tutorials for a detailed description of all configuration files.


  3. Start ImageJ (the HTPheno plugin is automatically installed).